COVID-19 Modelling Consortium: quantitative epidemiological predictions in response to an evolving pandemic

Grant number: MR/V038613/1

Grant search

Key facts

  • Disease

    COVID-19
  • Start & end year

    2020
    2020
  • Known Financial Commitments (USD)

    $4,099,240.88
  • Funder

    UK Research and Innovation (UKRI)
  • Principal Investigator

    Professor Matthew Keeling
  • Research Location

    United Kingdom
  • Lead Research Institution

    University of Warwick
  • Research Priority Alignment

    N/A
  • Research Category

    Epidemiological studies

  • Research Subcategory

    Disease transmission dynamics

  • Special Interest Tags

    N/A

  • Study Type

    Non-Clinical

  • Clinical Trial Details

    N/A

  • Broad Policy Alignment

    Pending

  • Age Group

    Not Applicable

  • Vulnerable Population

    Not applicable

  • Occupations of Interest

    Not applicable

Abstract

Mathematical and statistical modelling has been hugely influential providing rigorous estimates of the COVID-19 epidemic in the UK and making short-term and long-term predictions for decisions on interventions. We are leaving the first phase of this epidemic, cases are slowly declining but there are local outbreaks and variation between regions is of increasing importance. Although standard epidemiological modelling tools have worked well so far, a suite of new tools are now needed that can deal with spatially- and socially-structured stochastic dynamics and population heterogeneities. The teams of epidemiological modellers and statisticians in this consortium represent a core of committed and experienced research groups that have dedicated the last six months to generating predictions, forecasts and insights feeding into SPI-M and SAGE. To tackle the challenges of the next 18 months, these teams require investment in staff time and personnel. The proposed consortium will support these established and collaborating research teams, build national capacity and help train the next generation of applied epidemiological modellers. We have developed a core set of eight overarching questions that we feel underpin the future challenges that will need to be addressed by SPI-M, SAGE & JBC: 1. Data collation, processing and analysis 2. Statistical and computational fundamentals for outbreaks 3. Detection of hotspots or regions in need of greater control 4. Surveillance, Test and Trace 5. Structured environments (workplaces, care homes, hospitals, schools, universities) 6. Realistic individual-scale modelling of contemporary social interactions 7. Implications of finer-scale individual-level characteristics 8. Detailed retrospective analysis of the first wave

Publicationslinked via Europe PMC

The NOSTRA model: Coherent estimation of infection sources in the case of possible nosocomial transmission.

The Burr distribution as a model for the delay between key events in an individual's infection history.

Winter 2022-23 influenza vaccine effectiveness against influenza-related hospitalised aLRTD: A test-negative, case-control study.

A retrospective assessment of forecasting the peak of the SARS-CoV-2 Omicron BA.1 wave in England.

Unsupervised identification of significant lineages of SARS-CoV-2 through scalable machine learning methods.

A Bayesian approach to identifying the role of hospital structure and staff interactions in nosocomial transmission of SARS-CoV-2.

Tracking the structure and sentiment of vaccination discussions on Mumsnet.

Spatio-temporal surveillance and early detection of SARS-CoV-2 variants of concern: a retrospective analysis.

Characterisation of putative novel tick viruses and zoonotic risk prediction.