Sequencing of the genome of the SARS-CoV-2 virus for the monitoring and management of the Covid-19 epidemic in Andalusia and the rapid generation of prognostic biomarkers and response to treatment | Pandemic PACT Tracker

Key facts

Disease
COVID-19
start year
-99
Known Financial Commitments (USD)
$113,300
Funder
Junta de Andalucia
Principal Investigator
Joaquín Dopazo, Nicola Lorusso, Francisco Javier García León, José María Navarro Mari, Federico García García
…
Research Location
Spain
Lead Research Institution
Fundación Promoción Social
Research Priority Alignment
N/A

Research Category
Pathogen: natural history, transmission and diagnostics
Research Subcategory
Pathogen genomics, mutations and adaptations
Special Interest Tags
N/A
Study Type
Unspecified
Clinical Trial Details
N/A
Broad Policy Alignment
Pending
Age Group
Not Applicable
Vulnerable Population
Not applicable
Occupations of Interest
Not applicable

Abstract

Publicationslinked via Europe PMC

Last Updated:an hour ago

View all publications at Europe PMC

A Genomic Surveillance Circuit for Emerging Viral Pathogens.

The integrated genomic surveillance system of Andalusia (SIEGA) provides a One Health regional resource connected with the clinic.

Real-world evidence with a retrospective cohort of 15,968 COVID-19 hospitalized patients suggests 21 new effective treatments.

Detection of High Level of Co-Infection and the Emergence of Novel SARS CoV-2 Delta-Omicron and Omicron-Omicron Recombinants in the Epidemiological Surveillance of Andalusia.

Authors
Perez-Florido J, Casimiro-Soriguer CS, Ortuño F, Fernandez-Rueda JL, Aguado A, Lara M, Riazzo C, Rodriguez-Iglesias MA, Camacho-Martinez P, Merino-Diaz L, Pupo-Ledo I, de Salazar A, Viñuela L, Fuentes A, Chueca N, The Andalusian Covid-Sequencing Initiative, García F, Dopazo J, Lepe JA.
Publish Year
2023
Journal
International journal of molecular sciences
DOI
10.3390/ijms24032419

View at Europe PMC

Assessing the Impact of SARS-CoV-2 Lineages and Mutations on Patient Survival.

Authors
Loucera C, Perez-Florido J, Casimiro-Soriguer CS, Ortuño FM, Carmona R, Bostelmann G, Martínez-González LJ, Muñoyerro-Muñiz D, Villegas R, Rodriguez-Baño J, Romero-Gomez M, Lorusso N, Garcia-León J, Navarro-Marí JM, Camacho-Martinez P, Merino-Diaz L, Salazar A, Viñuela L, The Andalusian Covid-Sequencing Initiative, Lepe JA, Garcia F, Dopazo J.
Publish Year
2022
Journal
Viruses
DOI
10.3390/v14091893

View at Europe PMC

Highly accurate whole-genome imputation of SARS-CoV-2 from partial or low-quality sequences.