Sequencing of the genome of the SARS-CoV-2 virus for the monitoring and management of the Covid-19 epidemic in Andalusia and the rapid generation of prognostic biomarkers and response to treatment | Pandemic PACT Tracker

Key facts

Disease
COVID-19
Start & end year
N/A
Known Financial Commitments (USD)
$113,300
Funder
Junta de Andalucia
Principal Investigator
Joaquín Dopazo, Nicola Lorusso, Francisco Javier García León, José María Navarro Mari, Federico García García
Research Location
Spain
Lead Research Institution
Fundación Promoción Social
Research Priority Alignment
N/A

Research Category
Pathogen: natural history, transmission and diagnostics
Research Subcategory
Pathogen genomics, mutations and adaptations
Special Interest Tags
N/A
Study Type
Unspecified
Clinical Trial Details
N/A
Broad Policy Alignment
Pending
Age Group
Not Applicable
Vulnerable Population
Not applicable
Occupations of Interest
Not applicable

Abstract

6 Publications linked via Europe PMC

Last Updated:4 days ago

View all publications at Europe PMC

A Genomic Surveillance Circuit for Emerging Viral Pathogens.

The integrated genomic surveillance system of Andalusia (SIEGA) provides a One Health regional resource connected with the clinic.

Real-world evidence with a retrospective cohort of 15,968 COVID-19 hospitalized patients suggests 21 new effective treatments.

Detection of High Level of Co-Infection and the Emergence of Novel SARS CoV-2 Delta-Omicron and Omicron-Omicron Recombinants in the Epidemiological Surveillance of Andalusia.

Authors
Perez-Florido J, Casimiro-Soriguer CS, Ortuño F, Fernandez-Rueda JL, Aguado A, Lara M, Riazzo C, Rodriguez-Iglesias MA, Camacho-Martinez P, Merino-Diaz L, Pupo-Ledo I, de Salazar A, Viñuela L, Fuentes A, Chueca N, The Andalusian Covid-Sequencing Initiative, García F, Dopazo J, Lepe JA.
Publish Year
2023
Journal
International journal of molecular sciences
DOI
10.3390/ijms24032419

View at Europe PMC

Assessing the Impact of SARS-CoV-2 Lineages and Mutations on Patient Survival.

Authors
Loucera C, Perez-Florido J, Casimiro-Soriguer CS, Ortuño FM, Carmona R, Bostelmann G, Martínez-González LJ, Muñoyerro-Muñiz D, Villegas R, Rodriguez-Baño J, Romero-Gomez M, Lorusso N, Garcia-León J, Navarro-Marí JM, Camacho-Martinez P, Merino-Diaz L, Salazar A, Viñuela L, The Andalusian Covid-Sequencing Initiative, Lepe JA, Garcia F, Dopazo J.
Publish Year
2022
Journal
Viruses
DOI
10.3390/v14091893

View at Europe PMC

Highly accurate whole-genome imputation of SARS-CoV-2 from partial or low-quality sequences.