Streamlining laboratory procedures, bioinformatics and integrating use of genomic data in infectious disease surveillance in Finland

In the HERA funded project 'ÄúEnhancing Whole Genome Sequencing (WGS) and/or Reverse Transcription Polymerase Chain Reaction (RT-PCR) national infrastructures and capacities to respond to the Covid-19 pandemic in Finland'Äù national technical resources for genomic surveillance of SARS-CoV-2 and other infectious diseases were improved. The aim of the current project is to take improved technical resources into routine use. The project is divided in three work packages (WP) progressing in parallel. In WP1 Laboratory methodology and procedures we aim to develop and harmonize methodology for genetic surveillance of microbial infections including viruses and bacteria. In WP2 Public health microbiology bioinformatics in Finland we will streamline processes for genetic data analyses including data collection, transfer, storage, bioinformatical analysing and dissemination of results. In WP3 Surveillance systems we will integrate the produced and collected genetic data to surveillance systems and enhanced utilization in outbreak investigations, communication, and modelling. The Finnish Institute for Health and Welfare (THL) will be responsible for the project lead with clinical microbiology laboratories in Finland acting as associated partners. The duration of the project is 24 months.